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    LOC4334964 serine/arginine-rich splicing factor RS31 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334964, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4334964
    Gene description
    serine/arginine-rich splicing factor RS31
    Locus tag
    OSNPB_040118900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4334964 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (1203838..1208203, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (1120604..1125083, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase Pin1 Neighboring gene pentatricopeptide repeat-containing protein At3g57430, chloroplastic Neighboring gene disease resistance protein RPM1 Neighboring gene uncharacterized LOC4334965 Neighboring gene UPF0548 protein At2g17695

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor RS31
    Names
    Os04g0118900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      1203838..1208203 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777950.3 → XP_015633436.1  serine/arginine-rich splicing factor RS31 isoform X1

      UniProtKB/TrEMBL
      B8AUJ5, B9FD42, Q01MR9, Q7XTJ6
      Conserved Domains (1) summary
      cl17169
      Location:95 → 163
      RRM_SF; RNA recognition motif (RRM) superfamily

    2. XM_015777952.3 → XP_015633438.1  serine/arginine-rich splicing factor RS31 isoform X2

      Conserved Domains (2) summary
      TIGR01628
      Location:26 → 210
      PABP-1234; polyadenylate binding protein, human types 1, 2, 3, 4 family
      cl17169
      Location:85 → 153
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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