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    LOC4339156 non-specific lipid transfer protein GPI-anchored 12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339156, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4339156
    Gene description
    non-specific lipid transfer protein GPI-anchored 12
    Locus tag
    OSNPB_050489200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 15.9), flower buds (RPKM 14.1) and 5 other tissues See more
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    Genomic context

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    See LOC4339156 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (24160260..24162540, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24045564..24047854, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene type I inositol polyphosphate 5-phosphatase 10 Neighboring gene probable prolyl 4-hydroxylase 4 Neighboring gene uncharacterized LOC107277267 Neighboring gene ADP-ribosylation factor 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    non-specific lipid transfer protein GPI-anchored 12
    Names
    Os05g0489200
    xylogen-like protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      24160260..24162540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782409.3 → XP_015637895.1  non-specific lipid transfer protein GPI-anchored 12

      UniProtKB/TrEMBL
      A0A0P0WNU8, B7EFX9, B8AZH4, B9FA17, Q6AVM8
      Conserved Domains (2) summary
      PHA03247
      Location:122 → 183
      PHA03247; large tegument protein UL36; Provisional
      cd00010
      Location:59 → 123
      AAI_LTSS; Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. ...
    Nucleotide Protein
    Heading Accession and Version

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