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    LOC4338540 S-adenosylmethionine carrier 1, chloroplastic/mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338540, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4338540
    Gene description
    S-adenosylmethionine carrier 1, chloroplastic/mitochondrial
    Locus tag
    OSNPB_050361900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 23.0), flowers (RPKM 13.2) and 6 other tissues See more
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    Genomic context

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    See LOC4338540 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17376642..17380723, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17276737..17280806, complement)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136356450 Neighboring gene uncharacterized LOC136356661 Neighboring gene uncharacterized LOC107277871 Neighboring gene glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables S-adenosyl-L-methionine transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast envelope IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in mitochondrial inner membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    S-adenosylmethionine carrier 1, chloroplastic/mitochondrial
    Names
    Os05g0361900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17376642..17380723 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782220.3 → XP_015637706.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8AXD9, B9FP57, Q6L4L8
      Conserved Domains (1) summary
      PTZ00168
      Location:21 → 267
      PTZ00168; mitochondrial carrier protein; Provisional

    2. XM_066310712.1 → XP_066166809.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X1

    3. XM_066310711.1 → XP_066166808.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X1

    4. XM_026025836.2 → XP_025881621.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X2

      UniProtKB/TrEMBL
      B8AXD9
      Conserved Domains (1) summary
      cl28162
      Location:5 → 251
      Mito_carr; Mitochondrial carrier protein

    5. XM_015782219.3 → XP_015637705.1  S-adenosylmethionine carrier 1, chloroplastic/mitochondrial isoform X1

      UniProtKB/TrEMBL
      B8AXD9, B9FP57, Q6L4L8
      Conserved Domains (1) summary
      PTZ00168
      Location:21 → 267
      PTZ00168; mitochondrial carrier protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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