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    LOC4346314 small ribosomal subunit protein eS25y [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346314, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346314
    Gene description
    small ribosomal subunit protein eS25y
    Locus tag
    OSNPB_080559200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 311.9), flowers (RPKM 202.7) and 6 other tissues See more
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    Genomic context

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    See LOC4346314 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (28120443..28122014)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27973015..27974647)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4346312 Neighboring gene uncharacterized protein At2g27730, mitochondrial Neighboring gene probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY Neighboring gene peptidyl-prolyl cis-trans isomerase CYP18-2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS25y
    Names
    Os08g0559200
    P0562A06.14
    putative 40S ribosomal protein S25 (RPS25B)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      28120443..28122014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793907.3 → XP_015649393.1  small ribosomal subunit protein eS25y

      UniProtKB/TrEMBL
      A0A0P0XJH5, A3C1N8, Q6YZI2
      Conserved Domains (1) summary
      pfam03297
      Location:5 → 104
      Ribosomal_S25; S25 ribosomal protein
    Nucleotide Protein
    Heading Accession and Version

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