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    LOC4346431 uncharacterized LOC4346431 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346431, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4346431
    Gene description
    uncharacterized LOC4346431
    Locus tag
    OSNPB_090123500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 21.0), leaves before flowering (RPKM 15.0) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 9
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (5834770..5843277, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (1814009..1822551, complement)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene flowering time control protein FCA Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 3 Neighboring gene uncharacterized LOC107278813 Neighboring gene uncharacterized LOC4346432

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4346431
    Names
    Os09g0123500
    P0415D04.50
    ankyrin repeat domain-containing protein 50
    ankyrin repeat protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      5834770..5843277 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795930.3 → XP_015651416.1  uncharacterized protein LOC4346431

      UniProtKB/TrEMBL
      B8BD00, B9G263, Q6K268
      Conserved Domains (5) summary
      PLN03088
      Location:303 → 425
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      sd00006
      Location:305 → 330
      TPR; TPR repeat [structural motif]
      sd00045
      Location:147 → 175
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:10 → 110
      Ank_2; Ankyrin repeats (3 copies)
      cl39094
      Location:100 → 263
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

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