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    LOC4351951 uncharacterized LOC4351951 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351951, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351951
    Gene description
    uncharacterized LOC4351951
    Locus tag
    OSNPB_120270100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 11.6), leaves after flowering (RPKM 9.9) and 6 other tissues See more
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    Genomic context

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    See LOC4351951 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (9829512..9833247, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (9768559..9772372, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene prolamin PPROL 17D Neighboring gene prolamin PPROL 17D-like Neighboring gene pentatricopeptide repeat-containing protein OGR1, mitochondrial-like Neighboring gene phosphomethylpyrimidine synthase pseudogene Neighboring gene disease resistance protein RGA5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables coproporphyrinogen oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in porphyrin-containing compound biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4351951
    Names
    Os12g0270100
    oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      9829512..9833247 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762752.3 → XP_015618238.1  uncharacterized protein LOC4351951 isoform X1

      UniProtKB/TrEMBL
      B8AZP8, Q0IP01, Q2QU90
      Conserved Domains (1) summary
      PRK07379
      Location:49 → 462
      PRK07379; coproporphyrinogen III oxidase; Provisional

    2. XM_015762753.3 → XP_015618239.1  uncharacterized protein LOC4351951 isoform X2

      Conserved Domains (2) summary
      cd01335
      Location:54 → 187
      Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
      smart00729
      Location:49 → 270
      Elp3; Elongator protein 3, MiaB family, Radical SAM
    Nucleotide Protein
    Heading Accession and Version

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