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    LOC4343206 protein GRIP [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343206, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343206
    Gene description
    protein GRIP
    Locus tag
    OSNPB_070472500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 17.0), leaves after flowering (RPKM 15.1) and 6 other tissues See more
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    Genomic context

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    See LOC4343206 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (16971921..16984913)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4343204 Neighboring gene serine/threonine-protein kinase SRPK Neighboring gene uncharacterized LOC107281619 Neighboring gene uncharacterized mitochondrial protein AtMg00810-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Identification of rice (Oryza sativa) proteins linked to the cyclin-mediated regulation of the cell cycle. Cooper B, et al. Plant Mol Biol, 2003 Oct. PMID 14750518
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in reciprocal meiotic recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein GRIP
    Names
    Os07g0472500
    P0675B10.124
    myosin heavy chain-like protein
    plectin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      16971921..16984913
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792074.2 → XP_015647560.1  protein GRIP isoform X1

      UniProtKB/TrEMBL
      B9FX60, Q0D6J5, Q7F099
      Conserved Domains (2) summary
      TIGR02168
      Location:107 → 718
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam01465
      Location:724 → 763
      GRIP; GRIP domain

    2. XM_015792075.1 → XP_015647561.1  protein GRIP isoform X2

      Conserved Domains (3) summary
      pfam01465
      Location:572 → 610
      GRIP; GRIP domain
      pfam07851
      Location:34 → 136
      TMPIT; TMPIT-like protein
      cl07893
      Location:266 → 432
      AmyAc_family; Alpha amylase catalytic domain family
    Nucleotide Protein
    Heading Accession and Version

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