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    LOC9269482 U-box domain-containing protein 44 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9269482, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC9269482
    Gene description
    U-box domain-containing protein 44
    Locus tag
    OSNPB_120277400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 19.9), leaves after flowering (RPKM 17.8) and 6 other tissues See more
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    Genomic context

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    See LOC9269482 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10342057..10347681, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10280904..10286706, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-like domain-containing protein Neighboring gene U-box domain-containing protein 44 Neighboring gene ruBisCO large subunit-binding protein subunit alpha, chloroplastic Neighboring gene uncharacterized LOC107276434

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ubiquitin-protein transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    U-box domain-containing protein 44
    Names
    Os12g0277400
    putative armadillo/beta-catenin repeat family protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      10342057..10347681 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015764810.3 → XP_015620296.1  U-box domain-containing protein 44

      UniProtKB/TrEMBL
      A2ZJH6, A3CGE2, Q2QU07
      Conserved Domains (3) summary
      smart00504
      Location:24 → 92
      Ubox; Modified RING finger domain
      PLN03200
      Location:136 → 353
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:138 → 169
      ARM; armadillo repeat [structural motif]

    2. XM_026022021.2 → XP_025877806.1  U-box domain-containing protein 44

      UniProtKB/TrEMBL
      A2ZJH6, A3CGE2, Q2QU07
      Conserved Domains (3) summary
      smart00504
      Location:24 → 92
      Ubox; Modified RING finger domain
      PLN03200
      Location:136 → 353
      PLN03200; cellulose synthase-interactive protein; Provisional
      sd00043
      Location:138 → 169
      ARM; armadillo repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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