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    LOC4332476 serine/arginine-rich splicing factor RS2Z32 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4332476, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4332476
    Gene description
    serine/arginine-rich splicing factor RS2Z32
    Locus tag
    OSNPB_030285900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 57.3), flower buds (RPKM 39.8) and 6 other tissues See more
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    Genomic context

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    See LOC4332476 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (9903426..9906694, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (9852750..9856056, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene L-ascorbate peroxidase 1, cytosolic-like Neighboring gene mitogen-activated protein kinase 5-like Neighboring gene E3 ubiquitin-protein ligase SIRP1 Neighboring gene arogenate dehydratase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich splicing factor RS2Z32
    Names
    Os03g0285900

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      9903426..9906694 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015775011.2 → XP_015630497.1  serine/arginine-rich splicing factor RS2Z32

      UniProtKB/TrEMBL
      A2XZS4, B9F7Q3, Q10N19
      Conserved Domains (2) summary
      PTZ00368
      Location:90 → 152
      PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
      cl17169
      Location:12 → 81
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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