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    LOC4342169 transcription factor EMB1444 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342169, updated on 13-Jul-2024

    Summary

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    Gene symbol
    LOC4342169
    Gene description
    transcription factor EMB1444
    Locus tag
    OSNPB_070101200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots before flowering (RPKM 12.5), flowers (RPKM 5.7) and 6 other tissues See more
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    Genomic context

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    See LOC4342169 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (83712..89632)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (72818..82438)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9268212 Neighboring gene putative pentatricopeptide repeat-containing protein At1g74580 Neighboring gene BTB/POZ and MATH domain-containing protein 3 Neighboring gene very-long-chain aldehyde decarbonylase GL1-8

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor EMB1444; transcription factor bHLH157
    Names
    Os07g0101200
    Os07g0101300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      83712..89632
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312120.1 → XP_066168217.1  transcription factor EMB1444 isoform X1

    2. XM_066312118.1 → XP_066168215.1  transcription factor EMB1444 isoform X1

    3. XM_066312116.1 → XP_066168213.1  transcription factor EMB1444 isoform X1

    4. XM_066312119.1 → XP_066168216.1  transcription factor EMB1444 isoform X1

    5. XM_066312124.1 → XP_066168221.1  transcription factor EMB1444 isoform X2

    6. XM_066312122.1 → XP_066168219.1  transcription factor EMB1444 isoform X1

    7. XM_066312117.1 → XP_066168214.1  transcription factor EMB1444 isoform X1

    8. XM_066312115.1 → XP_066168212.1  transcription factor EMB1444 isoform X1

    9. XM_066312127.1 → XP_066168224.1  transcription factor EMB1444 isoform X5

    10. XM_066312125.1 → XP_066168222.1  transcription factor bHLH157 isoform X3

    11. XM_066312123.1 → XP_066168220.1  transcription factor EMB1444 isoform X2

    12. XM_066312128.1 → XP_066168225.1  transcription factor EMB1444 isoform X6

    13. XM_066312126.1 → XP_066168223.1  transcription factor bHLH157 isoform X4

    14. XM_066312121.1 → XP_066168218.1  transcription factor EMB1444 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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