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    LOC4334423 guanylate-binding protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334423, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4334423
    Gene description
    guanylate-binding protein 4
    Locus tag
    OSNPB_030796800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 15.2), leaves after flowering (RPKM 13.4) and 6 other tissues See more
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    Genomic context

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    See LOC4334423 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (33180953..33187194)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L4 Neighboring gene uncharacterized LOC4334422 Neighboring gene bZIP transcription factor RISBZ2-like Neighboring gene tryptophan synthase alpha chain

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    guanylate-binding protein 4; guanylate-binding protein 5
    Names
    Os03g0796800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

      Range
      33180953..33187194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776131.2 → XP_015631617.1  guanylate-binding protein 5 isoform X2

      Conserved Domains (1) summary
      cd01851
      Location:56 → 287
      GBP; Guanylate-binding protein (GBP) family (N-terminal domain)

    2. XM_015776132.2 → XP_015631618.1  guanylate-binding protein 4 isoform X3

      Conserved Domains (1) summary
      cd01851
      Location:56 → 287
      GBP; Guanylate-binding protein (GBP) family (N-terminal domain)

    3. XM_015776130.2 → XP_015631616.1  guanylate-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8J8XGW9, B9F6G4, Q10C30, Q7Y1H3
      Conserved Domains (2) summary
      cd01851
      Location:56 → 287
      GBP; Guanylate-binding protein (GBP) family (N-terminal domain)
      pfam02841
      Location:296 → 444
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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