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    LOC4331339 DEAD-box ATP-dependent RNA helicase 50-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331339, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4331339
    Gene description
    DEAD-box ATP-dependent RNA helicase 50-like
    Locus tag
    OSNPB_030108600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_09113; OJ1384D03.13
    Expression
    Broad expression in leaves before flowering (RPKM 107.0), roots after flowering (RPKM 50.0) and 6 other tissues See more
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    Genomic context

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    See LOC4331339 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (513288..516520)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (505759..509162)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene vacuolar protein sorting-associated protein 24 homolog 1 Neighboring gene very-long-chain aldehyde decarbonylase GL1-10-like Neighboring gene uncharacterized LOC4331340 Neighboring gene cyclin-dependent kinase A-1-like Neighboring gene NAC transcription factor 32

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD-box ATP-dependent RNA helicase 50
    Names
    LOC_Os03g01830
    NP_001410836.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423907.1 → NP_001410836.1  DEAD-box ATP-dependent RNA helicase 50

      Status: VALIDATED

      Source sequence(s)
      AK065776, CI075665, CI662748
      UniProtKB/Swiss-Prot
      A0A0P0VS39, B7EBC5, Q0DVX2, Q10SX0, Q8H7P8
      UniProtKB/TrEMBL
      B8ALF0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      513288..516520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DVX2.2 GenPept UniProtKB/Swiss-Prot:Q0DVX2

    Gene LinkOut

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