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    LOC4335627 stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335627, updated on 26-Jun-2024

    Summary

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    Gene symbol
    LOC4335627
    Gene description
    stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic-like
    Locus tag
    OSNPB_040379900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsJ_14516
    Expression
    Ubiquitous expression in flowers (RPKM 147.2), flower buds (RPKM 129.7) and 6 other tissues See more
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    Genomic context

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    See LOC4335627 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (18560189..18564412, complement)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene violaxanthin de-epoxidase, chloroplastic Neighboring gene uncharacterized LOC4335626 Neighboring gene suppressor of cytokine signaling 7 Neighboring gene F-box/kelch-repeat protein At1g67480

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Nucleotide sequence of a stearoyl-acyl carrier protein desaturase cDNA from developing seeds of rice. Akagi H, et al. Plant Physiol, 1995 Jun. PMID 7610181, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables stearoyl-[ACP] desaturase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast stroma IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic
    Names
    Acyl-[acyl-carrier-protein] desaturase 5
    LOC_Os04g31070
    OSJNBb0089B03.6
    Stearoyl-ACP desaturase 5
    stearyl-ACP desaturase
    XP_015636259.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402350.1 → NP_001389279.1  stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK065340, CI308486, D38753
      UniProtKB/Swiss-Prot
      A0A0P0W9B6, A2XSL4, Q0JDS9, Q40731, Q7XNQ5

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      18560189..18564412 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780773.1 → XP_015636259.1  stearoyl-[acyl-carrier-protein] 9-desaturase 5, chloroplastic

      UniProtKB/Swiss-Prot
      Q40731
      Conserved Domains (1) summary
      PLN00179
      Location:3 → 390
      PLN00179; acyl- [acyl-carrier protein] desaturase
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q40731.2 GenPept UniProtKB/Swiss-Prot:Q40731

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