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    LOC4326442 light-regulated protein, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326442, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326442
    Gene description
    light-regulated protein, chloroplastic-like
    Locus tag
    OSNPB_010102900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LIR1; OsJ_00023; P0436E04.2
    Expression
    Biased expression in leaves before flowering (RPKM 7852.8), leaves after flowering (RPKM 5114.1) and 3 other tissues See more
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    Genomic context

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    See LOC4326442 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (173329..174721, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (169386..170382, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326440 Neighboring gene DNA excision repair protein CSB-like Neighboring gene uncharacterized LOC112936174 Neighboring gene uncharacterized LOC107279520 Neighboring gene vacuolar protein sorting-associated protein 60.1 Neighboring gene protein NRT1/ PTR FAMILY 6.1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Circadian rhythmicity in the expression of a novel light-regulated rice gene. Reimmann C, et al. Plant Mol Biol, 1993 Apr. PMID 8499615
    2. LIGHT-INDUCED RICE1 Regulates Light-Dependent Attachment of LEAF-TYPE FERREDOXIN-NADP+ OXIDOREDUCTASE to the Thylakoid Membrane in Rice and Arabidopsis. Yang C, et al. Plant Cell, 2016 Mar. PMID 26941088, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    light-regulated protein, chloroplastic
    Names
    LOC_Os01g01340
    P0455C04.23
    P0672D08.50
    putative CR9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397954.1 → NP_001384883.1  light-regulated protein, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK067670, AU056052
      UniProtKB/Swiss-Prot
      Q03200, Q0JRG1, Q7F737
      UniProtKB/TrEMBL
      A2WJN0
      Conserved Domains (1) summary
      pfam07207
      Location:1 → 127
      Lir1; Light regulated protein Lir1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      173329..174721 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q03200.1 GenPept UniProtKB/Swiss-Prot:Q03200

    Gene LinkOut

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