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    LOC4328848 serine/threonine-protein kinase EDR1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328848, updated on 21-Dec-2023

    Summary

    Gene symbol
    LOC4328848
    Gene description
    serine/threonine-protein kinase EDR1
    Locus tag
    OSNPB_020241600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 18.9), leaves after flowering (RPKM 16.6) and 6 other tissues See more
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    Genomic context

    See LOC4328848 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8004986..8017219)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328845 Neighboring gene uncharacterized LOC4328847 Neighboring gene UDP-glycosyltransferase 72B1-like Neighboring gene hydroquinone glucosyltransferase

    Genomic regions, transcripts, and products

    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    probable serine/threonine-protein kinase DDB_G0267514; serine/threonine-protein kinase EDR1
    Names
    CTR1-like kinase kinase kinase-like
    OSJNBa0082C09.29
    Os02g0241600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      8004986..8017219
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770802.1XP_015626288.1  serine/threonine-protein kinase EDR1 isoform X1

      UniProtKB/TrEMBL
      B9F4H9, Q0E2G8, Q6ER39
      Conserved Domains (2) summary
      cd13999
      Location:540782
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:57252
      EDR1; Ethylene-responsive protein kinase Le-CTR1
    2. XM_015770803.1XP_015626289.1  probable serine/threonine-protein kinase DDB_G0267514 isoform X2

      UniProtKB/TrEMBL
      B9F4H9
      Conserved Domains (3) summary
      smart00220
      Location:454699
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd13999
      Location:459701
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:57149
      EDR1; Ethylene-responsive protein kinase Le-CTR1
    3. XM_015770804.2XP_015626290.1  serine/threonine-protein kinase EDR1 isoform X3

      UniProtKB/TrEMBL
      B9F4H9
      Conserved Domains (3) summary
      smart00220
      Location:407652
      S_TKc; Serine/Threonine protein kinases, catalytic domain
      cd13999
      Location:412654
      STKc_MAP3K-like; Catalytic domain of Mitogen-Activated Protein Kinase (MAPK) Kinase Kinase-like Serine/Threonine kinases
      pfam14381
      Location:22124
      EDR1; Ethylene-responsive protein kinase Le-CTR1