LOC4328215 proteasome subunit alpha type-1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4328215
Gene description: proteasome subunit alpha type-1-like
Locus tag: OSNPB_020133800
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: PAF1; OsJ_05275; P0585B01.3
Expression: Ubiquitous expression in flower buds (RPKM 60.1), flowers (RPKM 54.5) and 6 other tissues See more
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Genomic context

Location:: chromosome: 2

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	2	NC_029257.1 (1784552..1788073)

Chromosome 2 - NC_029257.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Process	Evidence Code	Pubs
involved_in ubiquitin-dependent protein catabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of proteasome core complex	IEA Inferred from Electronic Annotation more info	PubMed
part_of proteasome core complex, alpha-subunit complex	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: proteasome subunit alpha type-1

Names: 20S proteasome alpha subunit F; 20S proteasome subunit alpha-6; LOC_Os02g04100; P0030G11.18; Proteasome component C2; putative Proteasome subunit alpha type 1

XP_015626959.1

EC 3.4.25.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001406428.1 → NP_001393357.1 proteasome subunit alpha type-1

Status: VALIDATED

Source sequence(s)

CI155492, CI275916, CI709757, CI772054

UniProtKB/Swiss-Prot

P52428, Q0E466, Q6Z6I2

UniProtKB/TrEMBL

B8AHG2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029257.1 Reference IRGSP-1.0 Primary Assembly

Range

1784552..1788073

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015771473.2 → XP_015626959.1 proteasome subunit alpha type-1

UniProtKB/Swiss-Prot

P52428

Conserved Domains (1) summary

cd03749
Location:6 → 215

proteasome_alpha_type_1; The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming ...