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    LOC9270776 ATP synthase delta chain, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9270776, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC9270776
    Gene description
    ATP synthase delta chain, chloroplastic
    Locus tag
    OSNPB_020750100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 242.4), flowers (RPKM 89.9) and 4 other tissues See more
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    Genomic context

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    See LOC9270776 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32022229..32023869)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31526903..31528530)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative laccase-9 Neighboring gene transcription termination factor MTERF8, chloroplastic Neighboring gene transcription termination factor MTERF8, chloroplastic Neighboring gene transfer RNA tryptophan (anticodon CCA) Neighboring gene pentatricopeptide repeat-containing protein PPR5 homolog, chloroplastic-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables proton-transporting ATP synthase activity, rotational mechanism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in photosynthetic electron transport in photosystem I IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in photosynthetic electron transport in photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton motive force-driven ATP synthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of proton-transporting ATP synthase complex, catalytic core F(1) IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP synthase delta chain, chloroplastic
    Names
    Os02g0750100
    P0431B06.12
    putative H(+)-transporting ATP synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001416900.1 → NP_001403829.1  ATP synthase delta chain, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AP014958, CB667491, CB682694, CI483431
      UniProtKB/TrEMBL
      Q6Z8K7

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      32022229..32023869
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770888.3 → XP_015626374.1  ATP synthase delta chain, chloroplastic isoform X1

      UniProtKB/TrEMBL
      Q6Z8K7
      Conserved Domains (1) summary
      pfam00213
      Location:64 → 233
      OSCP; ATP synthase delta (OSCP) subunit

    RNA

    1. XR_001543599.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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    Molecular Biology Databases
    Research Materials