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    LOC4347875 arogenate dehydratase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347875, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347875
    Gene description
    arogenate dehydratase 3
    Locus tag
    OSNPB_090565700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1155_H10.1
    Expression
    Broad expression in leaves after flowering (RPKM 11.4), roots after flowering (RPKM 9.7) and 6 other tissues See more
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    Genomic context

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    See LOC4347875 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (26987345..26991783)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (22542143..22546477)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene nuclear pore complex protein GP210 Neighboring gene delta(14)-sterol reductase Neighboring gene uncharacterized LOC4347876 Neighboring gene arogenate dehydratase 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables arogenate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables prephenate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in L-phenylalanine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    arogenate dehydratase 3
    Names
    OSJNBa0070E11.10
    Os09g0565700
    putative prephenate dehydratase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      26987345..26991783
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795709.3 → XP_015651195.1  arogenate dehydratase 3

      UniProtKB/TrEMBL
      A2Z452, Q0IZK1, Q650W1
      Conserved Domains (1) summary
      PLN02317
      Location:5 → 383
      PLN02317; arogenate dehydratase

    2. XM_015795707.3 → XP_015651193.1  arogenate dehydratase 3

      UniProtKB/TrEMBL
      A2Z452, Q0IZK1, Q650W1
      Conserved Domains (1) summary
      PLN02317
      Location:5 → 383
      PLN02317; arogenate dehydratase
    Nucleotide Protein
    Heading Accession and Version

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