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    LOC4351467 E3 ubiquitin-protein ligase RING1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351467, updated on 13-Jul-2024

    Summary

    Gene symbol
    LOC4351467
    Gene description
    E3 ubiquitin-protein ligase RING1
    Locus tag
    OSNPB_120140600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 10.1), leaves after flowering (RPKM 9.0) and 6 other tissues See more
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    Genomic context

    See LOC4351467 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (1995675..1997300)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (1969657..1971640)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4351466 Neighboring gene sugar transport protein MST8-like Neighboring gene uncharacterized LOC4351468 Neighboring gene uncharacterized LOC136354867 Neighboring gene uncharacterized LOC4351469

    Genomic regions, transcripts, and products

    Expression

    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase RING1
    Names
    Os12g0140600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      1995675..1997300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762969.3XP_015618455.1  E3 ubiquitin-protein ligase RING1

      UniProtKB/TrEMBL
      A0A8J8XL89, A3CEU3, Q0IQ73, Q2QXW8
      Conserved Domains (1) summary
      cl17238
      Location:102146
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    2. XM_015762971.3XP_015618457.1  E3 ubiquitin-protein ligase RING1

      UniProtKB/TrEMBL
      A0A8J8XL89, A3CEU3, Q0IQ73, Q2QXW8
      Conserved Domains (1) summary
      cl17238
      Location:102146
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    3. XM_015762970.3XP_015618456.1  E3 ubiquitin-protein ligase RING1

      UniProtKB/TrEMBL
      A0A8J8XL89, A3CEU3, Q0IQ73, Q2QXW8
      Conserved Domains (1) summary
      cl17238
      Location:102146
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    4. XM_015762972.3XP_015618458.1  E3 ubiquitin-protein ligase RING1

      UniProtKB/TrEMBL
      A0A8J8XL89, A3CEU3, Q0IQ73, Q2QXW8
      Conserved Domains (1) summary
      cl17238
      Location:102146
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain