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    LOC4326701 uncharacterized LOC4326701 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326701, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4326701
    Gene description
    uncharacterized LOC4326701
    Locus tag
    OSNPB_010222700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 9.6), leaves after flowering (RPKM 6.1) and 6 other tissues See more
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    Genomic context

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    See LOC4326701 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6714265..6720680, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6705820..6710648, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326698 Neighboring gene V-type proton ATPase subunit E Neighboring gene uncharacterized LOC4326700 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene GDSL esterase/lipase At5g45910-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4326701
    Names
    Os01g0222700
    P0443E05.15
    hAT dimerisation domain-containing protein -like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6714265..6720680 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795181.3 → XP_015650667.1  uncharacterized protein LOC4326701

      UniProtKB/TrEMBL
      A0A0P0V005, Q0JPH5, Q5NB62
      Conserved Domains (3) summary
      pfam04937
      Location:184 → 334
      DUF659; Protein of unknown function (DUF 659)
      pfam05699
      Location:558 → 622
      Dimer_Tnp_hAT; hAT family C-terminal dimerization region
      pfam15328
      Location:56 → 152
      GCOM2; Putative GRINL1B complex locus protein 2

    2. XM_066303718.1 → XP_066159815.1  uncharacterized protein LOC4326701

    Nucleotide Protein
    Heading Accession and Version

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