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    LOC4328512 WRKY transcription factor WRKY71-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328512, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4328512
    Gene description
    WRKY transcription factor WRKY71-like
    Locus tag
    OSNPB_020181300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    WRKY71; wrky38; OsWRKY71; OJ1297_C09.15
    Expression
    Biased expression in roots before flowering (RPKM 1168.6), leaves before flowering (RPKM 115.9) and 1 other tissue See more
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    Genomic context

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    See LOC4328512 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (4542914..4544889)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase 2 Neighboring gene uncharacterized LOC4328510 Neighboring gene uncharacterized LOC107280141 Neighboring gene uncharacterized LOC107279961 Neighboring gene zinc finger CCCH domain-containing protein 43-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Characterization of an elicitor-induced rice WRKY gene, OsWRKY71. Chujo T, et al. Biosci Biotechnol Biochem, 2008 Jan. PMID 18175928
    2. A rice WRKY gene encodes a transcriptional repressor of the gibberellin signaling pathway in aleurone cells. Zhang ZL, et al. Plant Physiol, 2004 Apr. PMID 15047897, Free PMC Article
    3. OsWRKY71, a rice transcription factor, is involved in rice defense response. Liu X, et al. J Plant Physiol, 2007 Aug. PMID 16919842
    4. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    5. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    WRKY transcription factor WRKY71; wRKY transcription factor WRKY71
    Names
    Os02g0181300
    probable WRKY transcription factor 40
    transcription factor OsWRKY71

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409358.1 → NP_001396287.1  wRKY transcription factor WRKY71

      Status: VALIDATED

      Source sequence(s)
      AB190817, AU108720, CB647778
      UniProtKB/Swiss-Prot
      A0A0P0VFU9, Q6IEL0, Q6QHD1

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      4542914..4544889
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771931.1 → XP_015627417.1  WRKY transcription factor WRKY71

      UniProtKB/Swiss-Prot
      Q6QHD1
      Conserved Domains (1) summary
      smart00774
      Location:192 → 250
      WRKY; DNA binding domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6QHD1.1 GenPept UniProtKB/Swiss-Prot:Q6QHD1

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