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    LOC4334851 uncharacterized LOC4334851 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4334851, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4334851
    Gene description
    uncharacterized LOC4334851
    Locus tag
    OSNPB_030858400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 33.5), flower buds (RPKM 29.9) and 6 other tissues See more
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    Genomic context

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    See LOC4334851 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (37207683..37211917)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (36228698..36232912)

    Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein EXPORTIN 1A Neighboring gene uncharacterized LOC4334850 Neighboring gene uncharacterized LOC4334852 Neighboring gene uncharacterized LOC4334853 Neighboring gene protein DETOXIFICATION 56

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4334851
    Names
    Os03g0858400
    transducin beta-like protein 2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      37207683..37211917
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777728.3 → XP_015633214.1  uncharacterized protein LOC4334851

      UniProtKB/TrEMBL
      A2XPA6, A3APY2, Q84M69
      Conserved Domains (2) summary
      sd00039
      Location:257 → 301
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:88 → 436
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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