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    LOC4330559 uncharacterized WD repeat-containing protein C2A9.03 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330559, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330559
    Gene description
    uncharacterized WD repeat-containing protein C2A9.03
    Locus tag
    OSNPB_020721600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1008_D06.31-2
    Expression
    Ubiquitous expression in mature seeds (RPKM 77.1), flower buds (RPKM 54.8) and 6 other tissues See more
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    Genomic context

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    See LOC4330559 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29934486..29941663, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112937897 Neighboring gene ubiquitin-conjugating enzyme E2 E3-like Neighboring gene GPI-anchored protein LLG1 Neighboring gene phosphatidylinositol/phosphatidylcholine transfer protein SFH9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized WD repeat-containing protein C2A9.03
    Names
    Os02g0721600
    P0654B04.16-1
    P0654B04.16-2
    WD-40 repeat protein-like
    putative WD-40 repeat protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29934486..29941663 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771324.1 → XP_015626810.1  uncharacterized WD repeat-containing protein C2A9.03

      UniProtKB/TrEMBL
      A0A0P0VNT0, Q6Z664
      Conserved Domains (2) summary
      sd00039
      Location:234 → 273
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:256 → 432
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    Nucleotide Protein
    Heading Accession and Version

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