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    LOC4339045 putative respiratory burst oxidase homolog protein H [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339045, updated on 3-Dec-2024

    Summary

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    Gene symbol
    LOC4339045
    Gene description
    putative respiratory burst oxidase homolog protein H
    Locus tag
    OSNPB_050465800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4339045 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (22973702..22978574)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (22859936..22865062)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339043 Neighboring gene transfer RNA glutamic acid (anticodon CUC) Neighboring gene uncharacterized LOC112938947 Neighboring gene uncharacterized LOC112939091 Neighboring gene uncharacterized LOC4339047

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD(P)H oxidase H2O2-forming activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables peroxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative respiratory burst oxidase homolog protein H
    Names
    Os05g0465800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      22973702..22978574
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782560.3 → XP_015638046.1  putative respiratory burst oxidase homolog protein H isoform X2

      UniProtKB/TrEMBL
      A0A0N7KKX7, B8AZ16, Q0DHH6
      Conserved Domains (5) summary
      pfam08022
      Location:504 → 628
      FAD_binding_8; FAD-binding domain
      pfam08030
      Location:646 → 802
      NAD_binding_6; Ferric reductase NAD binding domain
      pfam01794
      Location:314 → 462
      Ferric_reduct; Ferric reductase like transmembrane component
      pfam08414
      Location:48 → 147
      NADPH_Ox; Respiratory burst NADPH oxidase
      pfam13499
      Location:146 → 218
      EF-hand_7; EF-hand domain pair

    2. XM_066310824.1 → XP_066166921.1  putative respiratory burst oxidase homolog protein H isoform X1

      UniProtKB/TrEMBL
      B8AZ16
    Nucleotide Protein
    Heading Accession and Version

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