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    LOC4330409 uncharacterized LOC4330409 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330409, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4330409
    Gene description
    uncharacterized LOC4330409
    Locus tag
    OSNPB_020697600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0459B01.7
    Expression
    Ubiquitous expression in flower buds (RPKM 15.4), mature seeds (RPKM 13.2) and 6 other tissues See more
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    Genomic context

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    See LOC4330409 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29179274..29183939)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28689504..28694106)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable 4-coumarate--CoA ligase 2 Neighboring gene pentatricopeptide repeat-containing protein At1g31920 Neighboring gene uncharacterized LOC4330410 Neighboring gene secretory carrier-associated membrane protein 5-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrion organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4330409
    Names
    26S proteosome regulatory subunit-like
    ATPase family AAA domain-containing protein 3-B
    Os02g0697600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      29179274..29183939
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771115.3 → XP_015626601.1  uncharacterized protein LOC4330409

      UniProtKB/TrEMBL
      A2X8L0, A3AAD9, Q0DYF3, Q6Z8F7
      Conserved Domains (2) summary
      pfam12037
      Location:65 → 329
      DUF3523; Domain of unknown function (DUF3523)
      cl38936
      Location:375 → 524
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    Nucleotide Protein
    Heading Accession and Version

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