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    LOC4329968 calcium uptake protein, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329968, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4329968
    Gene description
    calcium uptake protein, mitochondrial
    Locus tag
    OSNPB_020613000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1004_A05.37
    Expression
    Broad expression in flower buds (RPKM 18.2), flowers (RPKM 15.2) and 6 other tissues See more
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    Genomic context

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    See LOC4329968 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24641222..24645860)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24158323..24163075)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene sister chromatid cohesion protein PDS5 homolog C Neighboring gene temperature-induced lipocalin-1 Neighboring gene probable glycosyltransferase At5g20260 Neighboring gene uncharacterized LOC4329969

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium import into the mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in mitochondrial calcium ion homeostasis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of uniplex complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium uptake protein, mitochondrial
    Names
    Os02g0613000
    calcium uptake protein 1, mitochondrial
    putative calcium binding atopy-related autoantigen 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24641222..24645860
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771793.2 → XP_015627279.1  calcium uptake protein, mitochondrial

      UniProtKB/TrEMBL
      B8AFE5
      Conserved Domains (4) summary
      COG5126
      Location:282 → 432
      FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
      cd00051
      Location:176 → 233
      EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
      pfam13499
      Location:176 → 232
      EF-hand_7; EF-hand domain pair
      pfam13833
      Location:377 → 429
      EF-hand_8; EF-hand domain pair
    Nucleotide Protein
    Heading Accession and Version

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