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    LOC4351232 GDSL esterase/lipase WDL1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351232, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351232
    Gene description
    GDSL esterase/lipase WDL1-like
    Locus tag
    OSNPB_110708400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flower buds (RPKM 26.0), flowers (RPKM 20.0) and 5 other tissues See more
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    Genomic context

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    See LOC4351232 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (31044411..31046861)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (28982919..28985704)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136351254 Neighboring gene laccase-22-like Neighboring gene laccase-22-like Neighboring gene probable pyridoxal 5'-phosphate synthase subunit PDX1.1 Neighboring gene ATP-dependent DNA helicase Q-like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    GDSL esterase/lipase WDL1-like
    Names
    GDSL esterase/lipase CPRD49
    Os11g0708400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      31044411..31046861
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015760014.3 → XP_015615500.1  GDSL esterase/lipase WDL1-like

      UniProtKB/Swiss-Prot
      A3CE28, Q7XXR3
      Conserved Domains (1) summary
      cd01838
      Location:13 → 211
      Isoamyl_acetate_hydrolase_like; Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of ...
    Nucleotide Protein
    Heading Accession and Version

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