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    LOC4338559 uncharacterized LOC4338559 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4338559, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4338559
    Gene description
    uncharacterized LOC4338559
    Locus tag
    OSNPB_050366300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 4.3), milk grains (RPKM 4.1) and 6 other tissues See more
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    Genomic context

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    See LOC4338559 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 5 NC_089039.1 (17681411..17688327)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (17581259..17588207)

    Chromosome 5 - NC_089039.1Genomic Context describing neighboring genes Neighboring gene protein FAR1-RELATED SEQUENCE 5-like Neighboring gene beta-glucosidase 20-like Neighboring gene beta-glucosidase 22-like Neighboring gene putative beta-glucosidase 23 Neighboring gene uncharacterized LOC4338562

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4338559
    Names
    Os05g0366300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089039.1 Reference ASM3414082v1 Primary Assembly

      Range
      17681411..17688327
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015784545.3 → XP_015640031.1  uncharacterized protein LOC4338559 isoform X1

      Conserved Domains (1) summary
      cd11650
      Location:13 → 269
      AT4G37440_like; Uncharacterized protein domain conserved in plants

    2. XM_015784550.3 → XP_015640036.1  uncharacterized protein LOC4338559 isoform X2

      UniProtKB/TrEMBL
      B8AXF1, B9FP71, Q75IS4
      Conserved Domains (1) summary
      cd11650
      Location:13 → 268
      AT4G37440_like; Uncharacterized protein domain conserved in plants

    3. XM_015784547.3 → XP_015640033.1  uncharacterized protein LOC4338559 isoform X1

      Conserved Domains (1) summary
      cd11650
      Location:13 → 269
      AT4G37440_like; Uncharacterized protein domain conserved in plants

    4. XM_066311055.1 → XP_066167152.1  uncharacterized protein LOC4338559 isoform X2

      UniProtKB/TrEMBL
      B8AXF1, B9FP71, Q75IS4

    5. XM_015784544.3 → XP_015640030.1  uncharacterized protein LOC4338559 isoform X1

      Conserved Domains (1) summary
      cd11650
      Location:13 → 269
      AT4G37440_like; Uncharacterized protein domain conserved in plants

    6. XM_015784548.3 → XP_015640034.1  uncharacterized protein LOC4338559 isoform X2

      UniProtKB/TrEMBL
      B8AXF1, B9FP71, Q75IS4
      Conserved Domains (1) summary
      cd11650
      Location:13 → 268
      AT4G37440_like; Uncharacterized protein domain conserved in plants

    7. XM_015784546.3 → XP_015640032.1  uncharacterized protein LOC4338559 isoform X1

      Conserved Domains (1) summary
      cd11650
      Location:13 → 269
      AT4G37440_like; Uncharacterized protein domain conserved in plants

    8. XM_066311054.1 → XP_066167151.1  uncharacterized protein LOC4338559 isoform X2

      UniProtKB/TrEMBL
      B8AXF1, B9FP71, Q75IS4
    Nucleotide Protein
    Heading Accession and Version

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