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    LOC4331598 xyloglucan galactosyltransferase KATAMARI1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331598, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4331598
    Gene description
    xyloglucan galactosyltransferase KATAMARI1 homolog
    Locus tag
    OSNPB_030144800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1172F09.5
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    Genomic context

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    See LOC4331598 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (2495750..2498330)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (2486917..2489483)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene xyloglucan galactosyltransferase KATAMARI1 homolog Neighboring gene uncharacterized LOC136355775 Neighboring gene MDIS1-interacting receptor like kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycosyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein glycosylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    xyloglucan galactosyltransferase KATAMARI1 homolog
    Names
    LOC_Os03g05110
    NP_001404122.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001417193.1 → NP_001404122.1  xyloglucan galactosyltransferase KATAMARI1 homolog

      Status: VALIDATED

      Source sequence(s)
      AK103041, CI366258, D24609
      UniProtKB/TrEMBL
      A0A8J8YJF3, B8AND4, B9FB15, Q0DV79, Q10RV6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      2495750..2498330
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8H038.1 GenPept UniProtKB/Swiss-Prot:Q8H038

    Gene LinkOut

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