LOC4332674 guanylate kinase 2, chloroplastic/mitochondrial-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4332674
Gene description: guanylate kinase 2, chloroplastic/mitochondrial-like
Locus tag: OSNPB_030320900
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: V2; mGmk; OsGKpm
Expression: Ubiquitous expression in leaves before flowering (RPKM 12.3), flower buds (RPKM 10.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 3

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	3	NC_029258.1 (11595455..11599070)

Chromosome 3 - NC_029258.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice.
Title: CDE4 encodes a pentatricopeptide repeat protein involved in chloroplast RNA splicing and affects chloroplast development under low-temperature conditions in rice.

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables guanylate kinase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in purine nucleotide metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytosol	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: guanylate kinase 2, chloroplastic/mitochondrial

Names: GMP kinase 2; LOC_Os03g20460; Protein VIRESCENT 2; mitochondrial guanylate kinase

XP_015628708.1

EC 2.7.4.8

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001417616.1 → NP_001404545.1 guanylate kinase 2, chloroplastic/mitochondrial

Status: VALIDATED

Source sequence(s)

AB267728

UniProtKB/Swiss-Prot

A0A0N7KH63, Q10M74

UniProtKB/TrEMBL

B8ANE2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029258.1 Reference IRGSP-1.0 Primary Assembly

Range

11595455..11599070

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015773222.2 → XP_015628708.1 guanylate kinase 2, chloroplastic/mitochondrial

UniProtKB/Swiss-Prot

Q10M74

Conserved Domains (1) summary

cl17190
Location:88 → 283

NK; Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates ...