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    LOC4331510 ubiquitin domain-containing protein DSK2a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331510, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331510
    Gene description
    ubiquitin domain-containing protein DSK2a
    Locus tag
    OSNPB_030131300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in milk grains (RPKM 33.8), roots after flowering (RPKM 29.4) and 6 other tissues See more
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    Genomic context

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    See LOC4331510 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1799570..1804289, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1791628..1796366, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein NLP1-like Neighboring gene catalase isozyme C Neighboring gene uncharacterized LOC4331511 Neighboring gene thiol-disulfide oxidoreductase LTO1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables polyubiquitin modification-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ubiquitin domain-containing protein DSK2a
    Names
    Os03g0131300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      1799570..1804289 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015774262.3 → XP_015629748.1  ubiquitin domain-containing protein DSK2a isoform X1

      UniProtKB/TrEMBL
      A0A8J8XUU8, B8AME3, B9FAX6, Q0DVG2, Q10S80
      Conserved Domains (3) summary
      smart00727
      Location:366 → 403
      STI1; Heat shock chaperonin-binding motif
      cd14399
      Location:493 → 531
      UBA_PLICs; UBA domain of eukaryotic protein linking integrin-associated protein (IAP, also known as CD47) with cytoskeleton (PLIC) proteins
      cd16106
      Location:17 → 87
      Ubl_Dsk2p_like; ubiquitin-like (Ubl) domain found in Saccharomyces cerevisiae proteasome interacting protein Dsk2p and similar proteins

    2. XM_066308798.1 → XP_066164895.1  ubiquitin domain-containing protein DSK2a isoform X2

    Nucleotide Protein
    Heading Accession and Version

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