U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4337352 OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337352, updated on 1-Aug-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4337352
    Gene description
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
    Locus tag
    OSNPB_040670400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.9), leaves after flowering (RPKM 8.2) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34720902..34725565, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (34201019..34205705, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B11 Neighboring gene uncharacterized protein At4g06744 Neighboring gene oryzain beta chain-like Neighboring gene cysteine protease 1-like Neighboring gene probable phytol kinase 1, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cysteine-type deubiquitinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein deubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7
    Names
    OTU domain-containing protein 3
    Os04g0670400

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34720902..34725565 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066310074.1 → XP_066166171.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X3

      UniProtKB/TrEMBL
      Q258Z6

    2. XM_066310078.1 → XP_066166175.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X10

      UniProtKB/TrEMBL
      Q0J961

    3. XM_015777942.3 → XP_015633428.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X8

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:2 → 104
      OTU; OTU-like cysteine protease

    4. XM_015777943.3 → XP_015633429.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X8

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:2 → 104
      OTU; OTU-like cysteine protease

    5. XM_066310080.1 → XP_066166177.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X12

      UniProtKB/TrEMBL
      Q0J961

    6. XM_066310079.1 → XP_066166176.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X11

      UniProtKB/TrEMBL
      Q0J961

    7. XM_015777944.3 → XP_015633430.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X9

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:1 → 92
      OTU; OTU-like cysteine protease

    8. XM_066310075.1 → XP_066166172.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X5

      UniProtKB/TrEMBL
      Q258Z6

    9. XM_015777938.3 → XP_015633424.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X2

      UniProtKB/TrEMBL
      Q258Z6
      Conserved Domains (1) summary
      cl19932
      Location:52 → 164
      OTU; OTU-like cysteine protease

    10. XM_015777939.3 → XP_015633425.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X4

      UniProtKB/TrEMBL
      B8ARH9, B9FD82, Q258Z6
      Conserved Domains (1) summary
      cl19932
      Location:52 → 164
      OTU; OTU-like cysteine protease

    11. XM_015777937.3 → XP_015633423.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X1

      UniProtKB/TrEMBL
      Q258Z6
      Conserved Domains (1) summary
      cl19932
      Location:52 → 164
      OTU; OTU-like cysteine protease

    12. XM_066310076.1 → XP_066166173.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X7

      UniProtKB/TrEMBL
      Q0J961

    13. XM_015777941.3 → XP_015633427.1  OVARIAN TUMOR DOMAIN-containing deubiquitinating enzyme 7 isoform X6

      UniProtKB/TrEMBL
      Q0J961
      Conserved Domains (1) summary
      cl19932
      Location:9 → 114
      OTU; OTU-like cysteine protease

    RNA

    1. XR_010741061.1 RNA Sequence

    2. XR_010741062.1 RNA Sequence

    3. XR_010741058.1 RNA Sequence

    4. XR_010741059.1 RNA Sequence

    5. XR_010741055.1 RNA Sequence

    6. XR_010741056.1 RNA Sequence

    7. XR_001544896.3 RNA Sequence

    8. XR_010741060.1 RNA Sequence

    9. XR_010741057.1 RNA Sequence

    10. XR_001544898.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials