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    LOC4328770 uncharacterized LOC4328770 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4328770, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4328770
    Gene description
    uncharacterized LOC4328770
    Locus tag
    OSNPB_020224300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 76.3), roots after flowering (RPKM 72.7) and 6 other tissues See more
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    Genomic context

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    See LOC4328770 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7004029..7009534)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (6979488..6985011)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene probable protein phosphatase 2C 12 Neighboring gene serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B Neighboring gene xaa-Pro dipeptidase Neighboring gene protein NDL1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4328770
    Names
    Os02g0224300
    P0470A03.19
    far upstream element-binding protein 1
    high molecular weight glutenin subunit x-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      7004029..7009534
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769742.3 → XP_015625228.1  uncharacterized protein LOC4328770

      UniProtKB/TrEMBL
      B9F4C9
      Conserved Domains (4) summary
      PTZ00395
      Location:480 → 667
      PTZ00395; Sec24-related protein; Provisional
      PHA03247
      Location:312 → 601
      PHA03247; large tegument protein UL36; Provisional
      pfam00013
      Location:240 → 306
      KH_1; KH domain
      cl00098
      Location:147 → 212
      KH-I; K homology (KH) RNA-binding domain, type I
    Nucleotide Protein
    Heading Accession and Version

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