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    LOC4344256 serine/arginine-rich-splicing factor SR34 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344256, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4344256
    Gene description
    serine/arginine-rich-splicing factor SR34
    Locus tag
    OSNPB_070673500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 48.7), leaves after flowering (RPKM 43.7) and 6 other tissues See more
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    Genomic context

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    See LOC4344256 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (28697614..28702042, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (28469794..28474222, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107281655 Neighboring gene universal stress protein PHOS34 Neighboring gene uncharacterized LOC9269218 Neighboring gene F-box/kelch-repeat protein SKIP6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    serine/arginine-rich-splicing factor SR34
    Names
    Os07g0673500
    P0470D12.143-1
    putative pre-mRNA splicing factor SF2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      28697614..28702042 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791676.2 → XP_015647162.1  serine/arginine-rich-splicing factor SR34 isoform X1

      UniProtKB/TrEMBL
      Q7XI72
      Conserved Domains (3) summary
      COG0724
      Location:59 → 234
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12599
      Location:74 → 145
      RRM1_SF2_plant_like; RNA recognition motif 1 in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:174 → 249
      RRM2_SF2_plant_like; RNA recognition motif 2 in plant pre-mRNA-splicing factor SF2 and similar proteins

    2. XM_015791677.3 → XP_015647163.1  serine/arginine-rich-splicing factor SR34 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XA03, Q0D3Q1
      Conserved Domains (2) summary
      cd12599
      Location:8 → 79
      RRM1_SF2_plant_like; RNA recognition motif 1 (RRM1) found in plant pre-mRNA-splicing factor SF2 and similar proteins
      cd12602
      Location:108 → 183
      RRM2_SF2_plant_like; RNA recognition motif 2 (RRM2) found in plant pre-mRNA-splicing factor SF2 and similar proteins

    RNA

    1. XR_001547681.2 RNA Sequence

    2. XR_010742438.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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