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    LOC4331370 AP-2 complex subunit alpha-2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4331370, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4331370
    Gene description
    AP-2 complex subunit alpha-2
    Locus tag
    OSNPB_030112101
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 33.0), leaves after flowering (RPKM 32.1) and 6 other tissues See more
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    Genomic context

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    See LOC4331370 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    27
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (705499..716157)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (697870..708658)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene valine--tRNA ligase, mitochondrial 1-like Neighboring gene uncharacterized LOC4331367 Neighboring gene zinc finger CCCH domain-containing protein 44 Neighboring gene transmembrane and coiled-coil domain-containing protein 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-2 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-2 complex subunit alpha-2
    Names
    Os03g0112101
    Os03g0112400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      705499..716157
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776334.3 → XP_015631820.1  AP-2 complex subunit alpha-2

      UniProtKB/TrEMBL
      B9FAE7
      Conserved Domains (4) summary
      smart00809
      Location:782 → 875
      Alpha_adaptinC2; Adaptin C-terminal domain
      sd00044
      Location:361 → 389
      HEAT; HEAT repeat [structural motif]
      pfam02296
      Location:887 → 996
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
      pfam01602
      Location:25 → 583
      Adaptin_N; Adaptin N terminal region
    Nucleotide Protein
    Heading Accession and Version

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