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    LOC4326583 carbonic anhydrase, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326583, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326583
    Gene description
    carbonic anhydrase, chloroplastic
    Locus tag
    OSNPB_010639900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 853.6), flower buds (RPKM 382.6) and 4 other tissues See more
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    Genomic context

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    See LOC4326583 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (26274162..26286512)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (25692732..25705082)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene cinnamoyl-CoA reductase-like SNL6 Neighboring gene uncharacterized LOC4326582 Neighboring gene carbonic anhydrase, chloroplastic Neighboring gene probable E3 ubiquitin-protein ligase EDA40

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables carbonate dehydratase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbon utilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    carbonic anhydrase, chloroplastic
    Names
    Os01g0639900
    P0004A09.36
    carbonic anhydrase-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      26274162..26286512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761777.3 → XP_015617263.1  carbonic anhydrase, chloroplastic isoform X3

      Conserved Domains (1) summary
      cl00391
      Location:5 → 202
      beta_CA; Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an ...

    2. XM_015761752.2 → XP_015617238.1  carbonic anhydrase, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A8U0WPJ7, A2ZVV8, O80422, Q0JKY8, Q7F2G3
      Conserved Domains (1) summary
      cd00884
      Location:81 → 270
      beta_CA_cladeB; Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an ...

    3. XM_066311759.1 → XP_066167856.1  carbonic anhydrase, chloroplastic isoform X2

      UniProtKB/TrEMBL
      B7E5F1
    Nucleotide Protein
    Heading Accession and Version

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