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    LOC9266342 diacylglycerol kinase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266342, updated on 18-Sep-2024

    Summary

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    Gene symbol
    LOC9266342
    Gene description
    diacylglycerol kinase 1
    Locus tag
    OSNPB_030425300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC9266342 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18210907..18217078)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17754764..17761088)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4333152 Neighboring gene probable uridine nucleosidase 2 Neighboring gene UDP-glucose 6-dehydrogenase 1 Neighboring gene uncharacterized LOC4333157

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP-dependent diacylglycerol kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    diacylglycerol kinase 1
    Names
    Os03g0425300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18210907..18217078
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015772474.3 → XP_015627960.1  diacylglycerol kinase 1

      UniProtKB/TrEMBL
      B9F945, Q75GS1
      Conserved Domains (4) summary
      smart00046
      Location:374 → 500
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      pfam00609
      Location:519 → 675
      DAGK_acc; Diacylglycerol kinase accessory domain
      cd20805
      Location:171 → 236
      C1_DGK_rpt2; second protein kinase C conserved region 1 (C1 domain) found in the diacylglycerol kinase family
      cl00040
      Location:107 → 158
      C1; protein kinase C conserved region 1 (C1 domain) superfamily

    2. XM_015772473.2 → XP_015627959.1  diacylglycerol kinase 1

      UniProtKB/TrEMBL
      B9F945, Q75GS1
      Conserved Domains (4) summary
      smart00046
      Location:374 → 500
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      pfam00609
      Location:519 → 675
      DAGK_acc; Diacylglycerol kinase accessory domain
      cd20805
      Location:171 → 236
      C1_DGK_rpt2; second protein kinase C conserved region 1 (C1 domain) found in the diacylglycerol kinase family
      cl00040
      Location:107 → 158
      C1; protein kinase C conserved region 1 (C1 domain) superfamily

    3. XM_015772475.2 → XP_015627961.1  diacylglycerol kinase 1

      UniProtKB/TrEMBL
      B9F945, Q75GS1
      Conserved Domains (4) summary
      smart00046
      Location:374 → 500
      DAGKc; Diacylglycerol kinase catalytic domain (presumed)
      pfam00609
      Location:519 → 675
      DAGK_acc; Diacylglycerol kinase accessory domain
      cd20805
      Location:171 → 236
      C1_DGK_rpt2; second protein kinase C conserved region 1 (C1 domain) found in the diacylglycerol kinase family
      cl00040
      Location:107 → 158
      C1; protein kinase C conserved region 1 (C1 domain) superfamily
    Nucleotide Protein
    Heading Accession and Version

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