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    LOC9272427 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272427, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC9272427
    Gene description
    3-hydroxy-3-methylglutaryl-coenzyme A reductase 1-like
    Locus tag
    OSNPB_020713900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HMG1
    Expression
    Broad expression in flowers (RPKM 3.8), flower buds (RPKM 2.0) and 6 other tissues See more
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    Genomic context

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    See LOC9272427 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29586987..29592185, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene F-box/LRR-repeat protein At3g26922 Neighboring gene AT-hook motif nuclear-localized protein 25 Neighboring gene RNA-binding protein 24 Neighboring gene diacylglycerol O-acyltransferase 2D Neighboring gene pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydroxymethylglutaryl-CoA reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in coenzyme A metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sterol biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in peroxisomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    3-hydroxy-3-methylglutaryl-coenzyme A reductase 1
    Names
    HMG-CoA reductase 1
    LOC_Os02g48330
    XP_015623837.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001424589.1 → NP_001411518.1  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

      Status: VALIDATED

      Source sequence(s)
      AK069555
      UniProtKB/Swiss-Prot
      A2X8W3, P48019, Q0DY59
      UniProtKB/TrEMBL
      B8AHL4

    RNA

    1. NR_188794.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK069555

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29586987..29592185 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015768351.2 → XP_015623837.1  3-hydroxy-3-methylglutaryl-coenzyme A reductase 1

      Conserved Domains (1) summary
      cd00643
      Location:119 → 522
      HMG-CoA_reductase_classI; Class I hydroxymethylglutaryl-coenzyme A (HMG-CoA) reductase (HMGR)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0DY59.2 GenPept UniProtKB/Swiss-Prot:Q0DY59

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