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    ACA1 calcium-transporting ATPase 1, plasma membrane-type-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326507, updated on 6-Jun-2024

    Summary

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    Gene symbol
    ACA1
    Gene description
    calcium-transporting ATPase 1, plasma membrane-type-like
    Locus tag
    OSNPB_010939100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsACA1
    Expression
    Biased expression in flowers (RPKM 31.8) and flower buds (RPKM 8.7) See more
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    Genomic context

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    See ACA1 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (41219994..41227353)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326504 Neighboring gene nascent polypeptide-associated complex subunit alpha-like protein 1 Neighboring gene uncharacterized LOC107281122 Neighboring gene uncharacterized LOC4326508 Neighboring gene mediator of DNA damage checkpoint protein 1 Neighboring gene early nodulin-20

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables P-type calcium transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calmodulin binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in calcium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in intracellular membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    calcium-transporting ATPase 1, plasma membrane-type
    Names
    B1150F11.11
    Ca(2+)-ATPase
    LOC_Os01g71240
    P0504E02.35
    calcium-transporting ATPase 3, plasma membrane-type
    putative type IIB calcium ATPase
    XP_015621941.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001398015.1 → NP_001384944.1  calcium-transporting ATPase 1, plasma membrane-type

      Status: VALIDATED

      Source sequence(s)
      AK070064, CI345267
      UniProtKB/Swiss-Prot
      A0A0P0VCM3, Q0JG69, Q8RUN1
      UniProtKB/TrEMBL
      A3A1D5
      Conserved Domains (2) summary
      TIGR01517
      Location:65 → 1021
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12515
      Location:12 → 56
      CaATP_NAI; Ca2+-ATPase N terminal autoinhibitory domain

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      41219994..41227353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015766455.2 → XP_015621941.1  calcium-transporting ATPase 1, plasma membrane-type

      UniProtKB/Swiss-Prot
      Q8RUN1
      Conserved Domains (2) summary
      TIGR01517
      Location:65 → 1021
      ATPase-IIB_Ca; plasma-membrane calcium-translocating P-type ATPase
      pfam12515
      Location:12 → 56
      CaATP_NAI; Ca2+-ATPase N terminal autoinhibitory domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8RUN1.1 GenPept UniProtKB/Swiss-Prot:Q8RUN1

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