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    LOC4333674 disease resistance protein RGA5-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333674, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4333674
    Gene description
    disease resistance protein RGA5-like
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 14.4), leaves after flowering (RPKM 12.3) and 6 other tissues See more
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    Genomic context

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    See LOC4333674 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (27205176..27209431)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (26337596..26341796)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene putative F-box protein At3g16210 Neighboring gene uncharacterized LOC107277506 Neighboring gene protein WHAT'S THIS FACTOR 1 homolog, chloroplastic Neighboring gene BOI-related E3 ubiquitin-protein ligase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to other organism IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    disease resistance protein RGA5-like
    Names
    NBS-LRR protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      27205176..27209431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777571.3 → XP_015633057.1  disease resistance protein RGA5-like

      UniProtKB/TrEMBL
      A2XKF8, Q10FG8, Q60DM5, Q7Y192
      Conserved Domains (4) summary
      COG4886
      Location:565 → 776
      LRR; Leucine-rich repeat (LRR) protein [Transcription]
      cd14798
      Location:6 → 130
      RX-CC_like; Coiled-coil domain of the potato virux X resistance protein and similar proteins
      sd00033
      Location:571 → 593
      LRR_RI; leucine-rich repeat [structural motif]
      pfam00931
      Location:168 → 414
      NB-ARC; NB-ARC domain
    Nucleotide Protein
    Heading Accession and Version

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