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    LOC4336500 transcription factor LAF1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336500, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC4336500
    Gene description
    transcription factor LAF1
    Locus tag
    OSNPB_040532800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in milk grains (RPKM 7.0), mature seeds (RPKM 3.9) and 6 other tissues See more
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    Genomic context

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    See LOC4336500 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (26637819..26640654)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene salutaridine reductase Neighboring gene LIM domain-containing protein PLIM2b-like Neighboring gene uncharacterized LOC112938687 Neighboring gene DEAD-box ATP-dependent RNA helicase 6-like Neighboring gene transcription factor MYB41

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transcription factor LAF1
    Names
    Os04g0532800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      26637819..26640654
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015780748.2 → XP_015636234.1  transcription factor LAF1

      UniProtKB/TrEMBL
      A0A0P0WD68, A2XVU6, A3AVV3, Q7XML0
      Conserved Domains (1) summary
      PLN03091
      Location:6 → 149
      PLN03091; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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