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    LOC4343481 cysteine-rich receptor-like protein kinase 6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343481, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4343481
    Gene description
    cysteine-rich receptor-like protein kinase 6
    Locus tag
    OSNPB_070537900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1058_A12.141-1; OJ1058_A12.141-2
    Expression
    Broad expression in roots after flowering (RPKM 6.8), leaves after flowering (RPKM 6.7) and 6 other tissues See more
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    Genomic context

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    See LOC4343481 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (21374236..21377447)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (21146414..21149745)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene glucan endo-1,3-beta-glucosidase GII Neighboring gene cysteine-rich receptor-like protein kinase 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cysteine-rich receptor-like protein kinase 6
    Names
    Os07g0537900
    P0696F12.3-1
    P0696F12.3-2
    putative receptor-like protein kinase At4g00960
    serine/threonine kinase receptor precursor-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      21374236..21377447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791002.3 → XP_015646488.1  cysteine-rich receptor-like protein kinase 6

      UniProtKB/TrEMBL
      A0A0P0X6T7, A2YM80, Q0D5T2, Q7F1L5
      Conserved Domains (2) summary
      cd14066
      Location:358 → 623
      STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs
      pfam01657
      Location:31 → 125
      Stress-antifung; Salt stress response/antifungal
    Nucleotide Protein
    Heading Accession and Version

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