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    LOC4336129 glycerophosphodiester phosphodiesterase GDPDL3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4336129, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4336129
    Gene description
    glycerophosphodiester phosphodiesterase GDPDL3
    Locus tag
    OSNPB_040472300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in flower buds (RPKM 12.9), flowers (RPKM 7.9) and 2 other tissues See more
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    Genomic context

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    See LOC4336129 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (23606573..23611011)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene fasciclin-like arabinogalactan protein 7 Neighboring gene fasciclin-like arabinogalactan protein 7 Neighboring gene uncharacterized LOC107278567 Neighboring gene uncharacterized LOC9266635

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycerophosphodiester phosphodiesterase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glycerophosphodiester phosphodiesterase GDPDL3
    Names
    Os04g0472300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      23606573..23611011
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778632.2 → XP_015634118.1  glycerophosphodiester phosphodiesterase GDPDL3

      UniProtKB/TrEMBL
      B8AVI2, B9FFN8, Q01J03, Q7XR26
      Conserved Domains (2) summary
      cd08603
      Location:37 → 335
      GDPD_SHV3_repeat_1; Glycerophosphodiester phosphodiesterase domain repeat 1 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
      cd08604
      Location:352 → 652
      GDPD_SHV3_repeat_2; Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins
    Nucleotide Protein
    Heading Accession and Version

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