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    LOC4347960 acyl transferase 15-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347960, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC4347960
    Gene description
    acyl transferase 15-like
    Locus tag
    OSNPB_100108700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AT15; OsAT15; OsJ_30490
    Expression
    Restricted expression toward roots before flowering (RPKM 3.0) See more
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    Genomic context

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    See LOC4347960 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (583024..584656)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269858 Neighboring gene small nucleolar RNA Z247 Neighboring gene acyl transferase 15 Neighboring gene PAX-interacting protein 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    acyl transferase 15
    Names
    Acyl transferase 15
    LOC_Os10g01920
    OSJNBa0015O22.8
    Os10g0108700
    XP_015613915.1
    XP_025876476.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422966.1 → NP_001409895.1  acyl transferase 15

      Status: VALIDATED

      Source sequence(s)
      AK060060, CI429028
      UniProtKB/Swiss-Prot
      Q7XHC4, Q8S7Z5
      UniProtKB/TrEMBL
      A2Z4E7

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      583024..584656
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758429.2 → XP_015613915.1  acyl transferase 15

      UniProtKB/Swiss-Prot
      Q7XHC4
      Conserved Domains (1) summary
      pfam02458
      Location:12 → 376
      Transferase; Transferase family

    2. XM_026020691.1 → XP_025876476.1  acyl transferase 15

      UniProtKB/Swiss-Prot
      Q7XHC4, Q8S7Z5
      UniProtKB/TrEMBL
      A2Z4E7
      Conserved Domains (1) summary
      pfam02458
      Location:12 → 376
      Transferase; Transferase family
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XHC4.1 GenPept UniProtKB/Swiss-Prot:Q7XHC4

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