LOC4338100 endoglucanase 15-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4338100
Gene description: endoglucanase 15-like
Locus tag: OSNPB_050212300
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: OsCel9C
Expression: Low expression observed in reference dataset See more
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Genomic context

Location:: chromosome: 5

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	5	NC_029260.1 (6941881..6944825, complement)

Chromosome 5 - NC_029260.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables carbohydrate binding	IEA Inferred from Electronic Annotation more info	PubMed
enables hydrolase activity, hydrolyzing O-glycosyl compounds	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in carbohydrate metabolic process	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: endoglucanase 15

Names: Endo-1,4-beta glucanase 15; LOC_Os05g12150; OSJNBa0074P11.11

XP_015638347.1

EC 3.2.1.4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001420274.1 → NP_001407203.1 endoglucanase 15 precursor

Status: VALIDATED

Source sequence(s)

AK063458, AK099370, CI048078, CI610390

UniProtKB/Swiss-Prot

A0A0P0WJ95, Q0DJY9, Q6L4I2

UniProtKB/TrEMBL

A2Y1K4

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029260.1 Reference IRGSP-1.0 Primary Assembly

Range

6941881..6944825 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015782861.2 → XP_015638347.1 endoglucanase 15

Conserved Domains (3) summary

PLN02171
Location:107 → 731

PLN02171; endoglucanase

pfam09478
Location:637 → 715

CBM49; Carbohydrate binding domain CBM49

cl02959
Location:136 → 601

Glyco_hydro_9; Glycosyl hydrolase family 9