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    LOC9266191 60S ribosomal protein L10a [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9266191, updated on 6-Jun-2024

    Summary

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    Gene symbol
    LOC9266191
    Gene description
    60S ribosomal protein L10a
    Locus tag
    OSNPB_080558800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    RPL10A; OsJ_28271
    Expression
    Ubiquitous expression in flower buds (RPKM 153.7), flowers (RPKM 115.6) and 6 other tissues See more
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    Genomic context

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    See LOC9266191 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (27963131..27965477)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene vesicle-associated membrane protein 727 Neighboring gene multiple myeloma tumor-associated protein 2 homolog Neighboring gene uncharacterized LOC4346312 Neighboring gene uncharacterized protein At2g27730, mitochondrial

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    large ribosomal subunit protein uL1; 60S ribosomal protein L10a
    Names
    LOC_Os08g44450
    P0562A06.10-1
    P0562A06.10-2
    putative 60S ribosomal protein L10A (RPL10aC)
    putative Csa-19
    XP_015649389.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428223.1 → NP_001415152.1  large ribosomal subunit protein uL1

      Status: VALIDATED

      Source sequence(s)
      CB683275, CF297483, CI155212
      UniProtKB/Swiss-Prot
      B7F845, B8B9K6, C7J5H4
      UniProtKB/TrEMBL
      B9FYJ0

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27963131..27965477
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015793903.2 → XP_015649389.1  60S ribosomal protein L10a

      Conserved Domains (1) summary
      PTZ00029
      Location:1 → 216
      PTZ00029; 60S ribosomal protein L10a; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B7F845.1 GenPept UniProtKB/Swiss-Prot:B7F845

    Gene LinkOut

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