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    LOC4344349 transcription factor TGA2.1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344349, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4344349
    Gene description
    transcription factor TGA2.1-like
    Locus tag
    OSNPB_070687700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsNIF2; TGA2.1; OsbZIP63; OsJ_25648; OJ1150_E04.124; OJ1165_F02.101
    Expression
    Ubiquitous expression in roots after flowering (RPKM 44.6), leaves after flowering (RPKM 39.5) and 6 other tissues See more
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    Genomic context

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    See LOC4344349 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (29447297..29451228)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (29213428..29217405)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene rhodanese-like/PpiC domain-containing protein 12, chloroplastic Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene galactinol synthase 2 Neighboring gene manganese-dependent ADP-ribose/CDP-alcohol diphosphatase-like Neighboring gene pentatricopeptide repeat-containing protein At1g13040, mitochondrial

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Yilmaz A, et al. Plant Physiol, 2009 Jan. PMID 18987217, Free PMC Article
    2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sequence-specific DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription factor TGA2.1
    Names
    LOC_Os07g48820
    Transcription factor TGA2.1
    bZIP transcription factor 63
    transcription factor HBP-1b(c38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001423016.1 → NP_001409945.1  transcription factor TGA2.1

      Status: VALIDATED

      Source sequence(s)
      CB658769, CB676771, CI021721, CI303174, HQ858807
      UniProtKB/Swiss-Prot
      Q7X993, Q8W5R9
      UniProtKB/TrEMBL
      B8B660

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      29447297..29451228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312009.1 → XP_066168106.1  transcription factor TGA2.1 isoform X1

      UniProtKB/Swiss-Prot
      Q7X993, Q8W5R9
      UniProtKB/TrEMBL
      B8B660

    2. XM_066312010.1 → XP_066168107.1  transcription factor TGA2.1 isoform X2

      UniProtKB/TrEMBL
      B8B660

    3. XM_066312008.1 → XP_066168105.1  transcription factor TGA2.1 isoform X1

      UniProtKB/Swiss-Prot
      Q7X993, Q8W5R9
      UniProtKB/TrEMBL
      B8B660
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7X993.1 GenPept UniProtKB/Swiss-Prot:Q7X993

    Gene LinkOut

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