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    LOC4324926 uncharacterized LOC4324926 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324926, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324926
    Gene description
    uncharacterized LOC4324926
    Locus tag
    OSNPB_010869000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 29.1), leaves before flowering (RPKM 28.5) and 6 other tissues See more
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    Genomic context

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    See LOC4324926 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38283995..38289826, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37655427..37661644, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene subtilisin-like protease SBT3 Neighboring gene subtilisin-like protease SBT3 Neighboring gene cadmium/zinc-transporting ATPase HMA3-like Neighboring gene magnesium transporter MRS2-E-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4324926
    Names
    Os01g0869000
    P0677H08.27-1
    P0677H08.27-2
    P0677H08.27-3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      38283995..38289826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765927.3 → XP_015621413.1  uncharacterized protein LOC4324926 isoform X1

      UniProtKB/TrEMBL
      A0A0P0VAT8, B8A6Y7, B9EUV4, Q5N951
      Conserved Domains (1) summary
      pfam04842
      Location:558 → 788
      DUF639; Plant protein of unknown function (DUF639)

    2. XM_066310158.1 → XP_066166255.1  uncharacterized protein LOC4324926 isoform X2

    3. XM_026022358.2 → XP_025878143.1  uncharacterized protein LOC4324926 isoform X2

      UniProtKB/TrEMBL
      B8A6Y7
      Conserved Domains (1) summary
      pfam04842
      Location:432 → 662
      DUF639; Plant protein of unknown function (DUF639)
    Nucleotide Protein
    Heading Accession and Version

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