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    LOC9272197 DNA-binding protein RHL1 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9272197, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9272197
    Gene description
    DNA-binding protein RHL1
    Locus tag
    OSNPB_060730200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 12.2), leaves before flowering (RPKM 7.2) and 6 other tissues See more
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    Genomic context

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    See LOC9272197 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (31118689..31121976)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112939304 Neighboring gene lysM and putative peptidoglycan-binding domain-containing protein 1 Neighboring gene serine carboxypeptidase-like 34 Neighboring gene transmembrane protein 53 Neighboring gene uncharacterized LOC4342147

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate Root Hair Development. Moon S, et al. Plant Physiol, 2019 Feb. PMID 30545904, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. RSL class II transcription factors interact with RHL1 and assist in nuclear localization of RHL1.
      Title: RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate Root Hair Development.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA endoreduplication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-binding protein RHL1
    Names
    Os06g0730200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      31118689..31121976
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015785898.2 → XP_015641384.1  DNA-binding protein RHL1

      UniProtKB/TrEMBL
      A0A0P0X2T3, Q6ZA53

    RNA

    1. XR_003242906.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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