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    LOC4342614 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342614, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4342614
    Gene description
    probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
    Locus tag
    OSNPB_070190000
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    DXPS; OsJ_23394
    Expression
    Biased expression in leaves after flowering (RPKM 48.1), roots before flowering (RPKM 30.7) and 3 other tissues See more
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    Genomic context

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    See LOC4342614 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (4882226..4885685)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (4821213..4824667)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g14100 Neighboring gene uncharacterized protein At4g14100 Neighboring gene adenylate isopentenyltransferase 8, chloroplastic Neighboring gene uncharacterized LOC4342615

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Functional isolation of novel nuclear proteins showing a variety of subnuclear localizations. Moriguchi K, et al. Plant Cell, 2005 Feb. PMID 15659629, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 1-deoxy-D-xylulose-5-phosphate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in terpenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
    Names
    1-deoxyxylulose-5-phosphate synthase
    DXP synthase
    LOC_Os07g09190
    OSJNBb0002L09.31
    OSJNBb0003E08.7
    putative 1-deoxyxylulose 5-phosphate synthase
    NP_001408943.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001422014.1 → NP_001408943.1  1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK100909, BP184431, CI191255, CI341770, CI597238
      UniProtKB/Swiss-Prot
      A0A0N7KN22, Q6YU51
      UniProtKB/TrEMBL
      B8B7Y6

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      4882226..4885685
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6YU51.1 GenPept UniProtKB/Swiss-Prot:Q6YU51

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